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        "B",
        "C",
        "x",
        "y"
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      "rows": 100,
      "table": true,
      "tojson": true
    }
  ],
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      "page": "emmeans-package",
      "title": "Estimated marginal means (aka Least-squares means)",
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    {
      "page": "as.emmGrid",
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        "trt.vs.ctrlk.emmc",
        "tukey.emmc",
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      "page": "eff_size",
      "title": "Calculate Cohen effect sizes and confidence bounds thereof",
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        "eff_size"
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    {
      "page": "glht-support",
      "title": "Support for 'multcomp::glht'",
      "topics": [
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        "as.glht.emmGrid",
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        "glht-support",
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        "glht.emmlf",
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      "page": "emm_example",
      "title": "Run or list additional examples",
      "topics": [
        "emm_example"
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    {
      "page": "emm_list-object",
      "title": "The 'emm_list' class",
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        "emm_options",
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        "with_emm_options"
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      "page": "emmeans",
      "title": "Estimated marginal means (Least-squares means)",
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        "emmeans"
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    {
      "page": "emmGrid-class",
      "title": "The 'emmGrid' class",
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        "emmGrid-class"
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    },
    {
      "page": "emmip",
      "title": "Interaction-style plots for estimated marginal means",
      "topics": [
        "emmip",
        "emmip.default",
        "emmip_ggplot",
        "emmip_lattice"
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      "page": "emmobj",
      "title": "Construct an 'emmGrid' object from scratch",
      "topics": [
        "emmobj"
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    {
      "page": "emtrends",
      "title": "Estimated marginal means of linear trends",
      "topics": [
        "emtrends"
      ]
    },
    {
      "page": "extending-emmeans",
      "title": "Support functions for model extensions",
      "topics": [
        ".all.vars",
        ".aovlist.dffun",
        ".cmpMM",
        ".combine.terms",
        ".diag",
        ".emm_register",
        ".emm_vignette",
        ".get.excl",
        ".get.offset",
        ".hurdle.support",
        ".my.vcov",
        ".num.key",
        ".std.link.labels",
        ".zi.support",
        "emm_basis",
        "extending-emmeans",
        "recover_data",
        "recover_data.call"
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    },
    {
      "page": "feedlot",
      "title": "Feedlot data",
      "topics": [
        "feedlot"
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    {
      "page": "fiber",
      "title": "Fiber data",
      "topics": [
        "fiber"
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    {
      "page": "hpd.summary",
      "title": "Summarize an emmGrid from a Bayesian model",
      "topics": [
        "hpd.summary"
      ]
    },
    {
      "page": "joint_tests",
      "title": "Compute joint tests of the terms in a model",
      "topics": [
        "joint_tests",
        "make.meanint",
        "make.symmint",
        "meanint",
        "symmint"
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    {
      "page": "wrappers",
      "title": "Wrappers for alternative naming of EMMs",
      "topics": [
        "get.lsm.option",
        "lsm",
        "lsm.options",
        "lsmeans",
        "lsmip",
        "lsmobj",
        "lstrends",
        "wrappers"
      ]
    },
    {
      "page": "make.tran",
      "title": "Response-transformation extensions",
      "topics": [
        "inverse",
        "make.tran"
      ]
    },
    {
      "page": "MOats",
      "title": "Oats data in multivariate form",
      "topics": [
        "MOats"
      ]
    },
    {
      "page": "models",
      "title": "Models supported in 'emmeans'",
      "topics": [
        "models"
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    {
      "page": "mvcontrast",
      "title": "Multivariate contrasts",
      "topics": [
        "mvcontrast"
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    {
      "page": "mvregrid",
      "title": "Multivariate regridding",
      "topics": [
        "mvregrid"
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    {
      "page": "neuralgia",
      "title": "Neuralgia data",
      "topics": [
        "neuralgia"
      ]
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    {
      "page": "nutrition",
      "title": "Nutrition data",
      "topics": [
        "nutrition"
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    {
      "page": "oranges",
      "title": "Sales of oranges",
      "topics": [
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    {
      "page": "pigs",
      "title": "Effects of dietary protein on free plasma leucine concentration in pigs",
      "topics": [
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    },
    {
      "page": "plot",
      "title": "Plot an 'emmGrid' or 'summary_emm' object",
      "topics": [
        "plot.emmGrid",
        "plot.summary_emm"
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    },
    {
      "page": "pwpm",
      "title": "Pairwise P-value matrix (plus other statistics)",
      "topics": [
        "pwpm"
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    {
      "page": "pwpp",
      "title": "Pairwise P-value plot",
      "topics": [
        "pwpp"
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    {
      "page": "qdrg",
      "title": "Quick and dirty reference grid",
      "topics": [
        "qdrg",
        "qdrg.default"
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    },
    {
      "page": "rbind.emmGrid",
      "title": "Combine or subset 'emmGrid' objects",
      "topics": [
        "+.emmGrid",
        "force_regular",
        "head.emmGrid",
        "rbind.emmGrid",
        "rbind.emm_list",
        "rbind.summary_emm",
        "subset.emmGrid",
        "tail.emmGrid",
        "[.emmGrid"
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    },
    {
      "page": "ref_grid",
      "title": "Create a reference grid from a fitted model",
      "topics": [
        "ref_grid"
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    },
    {
      "page": "regrid",
      "title": "Reconstruct a reference grid with a new transformation or simulations",
      "topics": [
        "regrid"
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    },
    {
      "page": "emmGrid-methods",
      "title": "Miscellaneous methods for 'emmGrid' objects",
      "topics": [
        "linfct",
        "linfct.default",
        "print.emmGrid",
        "str.emmGrid",
        "vcov.emmGrid"
      ]
    },
    {
      "page": "summary.emmGrid",
      "title": "Summaries, predictions, intervals, and tests for 'emmGrid' objects",
      "topics": [
        "as.data.frame.emmGrid",
        "confint.emmGrid",
        "predict.emmGrid",
        "summary.emmGrid",
        "test",
        "test.emmGrid",
        "[.summary_emm"
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    },
    {
      "page": "ubds",
      "title": "Unbalanced dataset",
      "topics": [
        "ubds"
      ]
    },
    {
      "page": "untidy",
      "title": "Dare to be un-\"tidy\"!",
      "topics": [
        "untidy"
      ]
    },
    {
      "page": "update.emmGrid",
      "title": "Update an 'emmGrid' object",
      "topics": [
        "levels<-.emmGrid",
        "update.emmGrid",
        "update.summary_emm"
      ]
    },
    {
      "page": "xtable.emmGrid",
      "title": "Using 'xtable' for EMMs",
      "topics": [
        "print.xtable_emm",
        "xtable.emmGrid",
        "xtable.summary_emm"
      ]
    }
  ],
  "_pkglogo": "https://github.com/rvlenth/emmeans/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/rvlenth/emmeans/raw/HEAD/README.md",
  "_rundeps": [
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  "_vignettes": [
    {
      "source": "AQuickStart.Rmd",
      "filename": "AQuickStart.html",
      "title": "Quick start guide for emmeans",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "The three basic steps",
        "One-factor model",
        "Two factors, no interaction",
        "Two interacting factors",
        "Diagonal comparisons",
        "Interaction contrasts",
        "Three or more factors",
        "Additional options",
        "What you see versus what you get",
        "Common things that can go wrong",
        "Only one mean is obtained -- or fewer than expected",
        "Having trouble with follow-up analyses, and the pairwise ~ ... recipe",
        "Further reading"
      ],
      "created": "2023-01-16 22:49:58",
      "modified": "2026-03-30 01:39:15",
      "commits": 9
    },
    {
      "source": "basics.Rmd",
      "filename": "basics.html",
      "title": "Basics of estimated marginal means",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "Foundations",
        "Emphasis on experimental data",
        "Emphasis on models",
        "Illustration: pigs experiment",
        "Estimated marginal means",
        "The reference grid, and definition of EMMs",
        "More on the reference grid",
        "",
        "Other topics",
        "Passing arguments",
        "Transformations",
        "Derived covariates",
        "Non-predictor variables",
        "Graphical displays",
        "",
        "",
        "Formatting results",
        "Using weights",
        "Multivariate responses",
        "Objects, structures, and methods",
        "P values, \"significance\", and recommendations",
        "A set of comparisons or well-chosen contrasts is more useful and interpretable than an omnibus F test",
        "Use adjusted P values",
        "It is not necessary to have a significant F test as a prerequisite to doing comparisons or contrasts",
        "Get the model right first",
        "Consider seeking the advice of a statistical consultant",
        "Summary of main points",
        "References",
        "Further reading"
      ],
      "created": "2017-09-30 17:31:29",
      "modified": "2024-12-18 16:54:03",
      "commits": 32
    },
    {
      "source": "comparisons.Rmd",
      "filename": "comparisons.html",
      "title": "Comparisons and contrasts in emmeans",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "Pairwise comparisons",
        "Matrix displays",
        "Effect size",
        "Graphical comparisons",
        "Pairwise P-value plots",
        "Compact letter displays (CLDs)",
        "Other contrasts",
        "Normalized contrasts",
        "Formula interface",
        "Custom contrasts and linear functions",
        "Special properties of log (and logit) transformations"
      ],
      "created": "2017-09-30 17:31:29",
      "modified": "2025-04-10 00:42:50",
      "commits": 30
    },
    {
      "source": "confidence-intervals.Rmd",
      "filename": "confidence-intervals.html",
      "title": "Confidence intervals and tests in emmeans",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "summary(), confint(), and test()",
        "Back-transforming",
        "Multiplicity adjustments",
        "\"By\" variables",
        "Adjustments across by groups",
        "Simple comparisons",
        "Joint tests",
        "Testing equivalence, noninferiority, and nonsuperiority",
        "Graphics"
      ],
      "created": "2017-09-30 17:31:29",
      "modified": "2024-12-18 16:54:03",
      "commits": 24
    },
    {
      "source": "xplanations.Rmd",
      "filename": "xplanations.html",
      "title": "Explanations supplement",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "Sub-models",
        "A note on multivariate models",
        "Comparison arrows",
        "Examples and tests",
        "Related reading on comparisons",
        "Confounded effects in joint tests",
        "Intricacies of offsets"
      ],
      "created": "2020-05-15 16:43:03",
      "modified": "2024-05-04 20:55:35",
      "commits": 15
    },
    {
      "source": "FAQs.Rmd",
      "filename": "FAQs.html",
      "title": "FAQs for emmeans",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "What are EMMs/lsmeans?",
        "What is the fastest way to obtain EMMs and pairwise comparisons?",
        "I wanted comparisons, but all I get is (nothing)",
        "The model I fitted is not supported by emmeans",
        "I have three (or two or four) factors that interact",
        "I have covariate(s) that interact(s) with factor(s)",
        "I have covariate(s) and am fitting a polynomial model",
        "I have transformed covariate(s)",
        "Some \"significant\" comparisons have overlapping confidence intervals",
        "All my pairwise comparisons have the same P value",
        "emmeans() doesn't work as expected",
        "All or some of the results are NA",
        "If I analyze subsets of the data separately, I get different results",
        "My lsmeans/EMMs are way off from what I expected",
        "Why do I get Inf for the degrees of freedom?",
        "I get exactly the same comparisons for each \"by\" group",
        "My ANOVA F is significant, but no pairwise comparisons are",
        "I wanted differences, but instead I got ratios (or odds ratios)",
        "I asked for Tukey adjustments, but that's not what I got",
        "emmeans() completely ignores my P-value adjustments",
        "emmeans() gives me pooled t tests, but I expected Welch's t",
        "I want to see more digits",
        "I want to reproduce results from Stata's margins command"
      ],
      "created": "2017-09-30 17:31:29",
      "modified": "2025-04-01 16:20:06",
      "commits": 32
    },
    {
      "source": "xtending.Rmd",
      "filename": "xtending.html",
      "title": "For developers: Extending emmeans",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "Introduction",
        "Data example",
        "Supporting rlm",
        "Quick and dirty support",
        "Supporting lqs objects",
        "The recover_data method",
        "Special arguments",
        "Error handling",
        "The emm_basis method",
        "",
        "Dissecting emm_basis.lqs",
        "Communication between methods",
        "Hook functions",
        "Re-gridded basis",
        "Exported methods from emmeans",
        "Existing support for rsm objects",
        "The recover_data method",
        "The emm_basis method",
        "A demonstration",
        "Dispatching and restrictions",
        "Exporting and registering your methods",
        "Conclusions"
      ],
      "created": "2018-04-18 00:58:38",
      "modified": "2026-03-30 01:39:15",
      "commits": 29
    },
    {
      "source": "vignette-topics.Rmd",
      "filename": "vignette-topics.html",
      "title": "Index of vignette topics",
      "author": "emmeans package, Version r packageVersion('emmeans')",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Jump to:  A B C D E F G H I J K L M N O P Q R S T U V W X Z",
        "A",
        "B",
        "C",
        "D",
        "E",
        "F",
        "G",
        "H",
        "I",
        "J",
        "K",
        "L",
        "M",
        "N",
        "O",
        "P",
        "Q",
        "R",
        "S",
        "T",
        "U",
        "V",
        "W",
        "X",
        "Z"
      ],
      "created": "2018-04-07 16:04:43",
      "modified": "2026-02-27 00:51:28",
      "commits": 95
    },
    {
      "source": "interactions.Rmd",
      "filename": "interactions.html",
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      "author": "emmeans package, Version r packageVersion('emmeans')",
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